2009 SemanticAnnotationOfPapers

• (Liakata et al., 2009) ⇒ Maria Liakata, Q. Claire, Larisa N. Soldatova. (2009). “Semantic Annotation of Papers: Interface & enrichment tool (SAPIENT).” In: Proceedings of BioNLP Workshop (BioNLP 2009).

Subject Headings: SAPIENT Annotation Tool, Semantic Text Annotation Tool, Semantically Annotated Corpus, Chemistry, Scientific Literature.

Cited By

• ~3 http://scholar.google.com/scholar?cites=4686899547957363151

2010

• (Liakata et al., 2010) ⇒ Maria Liakata, Simone Teufel, Advaith Siddharthan, Colin R. Batchelor. (2010). “Corpora for the Conceptualisation and Zoning of Scientific Papers.” In: Proceedings of LREC Conference (LREC 2010).
• (Guo et al., 2010) ⇒ Yufan Guo, Anna Korhonen, Maria Liakata, Ilona Silins, Lin Sun, and Ulla Stenius. (2010). “Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes.” In: Proceedings of the BioNLP Workshop on Linking Natural Language Processing and Biology (BioNLP 2010).

Quotes

Abstract

• In this paper we introduce a web application (SAPIENT) for sentence based annotation of full papers with semantic information. SAPIENT enables experts to annotate scientific papers sentence by sentence and also to link related sentences together, thus forming spans of interesting regions, which can facilitate text mining applications. As part of the system, we developed an XML-aware sentence splitter (SSSplit) which preserves XML markup and identifies sentences through the addition of in-line markup. SAPIENT has been used in a systematic study for the annotation of scientific papers with concepts representing the Core Information about Scientific Papers (CISP) to create a corpus of 225 annotated papers.

References

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• Maria Liakata and Larisa N. Soldatova. (2008). Guidelines for the annotation of General Scientific Concepts JISC Project Report, http://ie-repository.jisc.ac.uk/.
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• Lawrence Owusu. (2008). XML-Aware Sentence Splitter. MPhil thesis, Cambridge, UK.
• CJ Rupp, Ann Copestake, Simone Teufel and Ben Waldron. (2006). Flexible Interfaces in the Application of Language Technology to an eScience Corpus. Proceedings of the UK e-Science Programme All Hands Meeting 2006 (AHM2006), Nottingham, UK Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky and W.
• John Wilbur. (2008). Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinformatics, 24(18):2086–2093.
• Larisa N. Soldatova and Maria Liakata. (2007). An ontology methodology and CISP - the proposed Core Information about Scientific Papers. JISC Project Report, http://ie-repository.jisc.ac.uk/137/.
• L. Soldatova, C. Batchelor, M. Liakata, H. Fielding, S. Lewis and R. King 2007. ART: An ontology based tool for the translation of papers into Semantic Web format. Proceedings of the SIG/ISMB07 ontology workshop., p.33–36.
• Larisa N. Soldatova and Ross D. King. (2006). An Ontology of Scientific Experiments. Journal of the Royal Society Interface, 3:795–803.
• S. Teufel and M. Moens. (2002). Summarizing Scientific Articles – Experiments with Relevance and Rhetorical Status. Computational Linguistics, 28(4). (preprint)
• W. Wilbur, A. Rzhetsky and H. Shatkay. (2006). New Directions in Biomedical Text Annotations: Deifinitions, Guidelines and Corpus Construction. BMC Bioinformatics, 7:356.

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	Author	volume	Date Value	title	type	journal	titleUrl	doi	note	year
2009 SemanticAnnotationOfPapers	Maria Liakata Q. Claire Larisa Soldatova			Semantic Annotation of Papers: Interface & enrichment tool (SAPIENT)		Proceedings of BioNLP Workshop	http://www.aber.ac.uk/en/media/sapientBio2009Final.pdf			2009