2008 ModelingScience

• (Blei, 2008) ⇒ David M. Blei. (2008). “Modeling Science.” Presentation. April 17, 2008

Subject Headings: Topic Modeling, Latent Dirichlet Allocation, Graphical Models.

Quotes

Modeling Science

• On-line archives of document collections require better organization. Manual organization is not practical.
• Our goal: To discover the hidden thematic structure with hierarchical probabilistic models called topic models.
• Use this structure for browsing, search, and similarity.
• Our data are the pages Science from 1880-2002 (from JSTOR)
• No reliable punctuation, meta-data, or references.
• Note: this is just a subset of JSTOR’s archive.

Discover topics from a corpus

• human evolution disease computer genome evolutionary host models dna species bacteria information genetic organisms diseases data genes life resistance computers sequence origin bacteria …

Probabilistic modeling

• Treat data as observations that arise from a generative probabilistic process that includes hidden variables
  • For documents, the hidden variables reflect the thematic structure of the collection.
• Infer the hidden structure using posterior inference
  • What are the topics that describe this collection?
• Situate new data into the estimated model.
  • How does this query or new document fit into the estimated topic structure?

Graphical models (Aside)

• Nodes are random variables
• Edges denote possible dependence
• Observed variables are shaded
• Plates denote replicated structure

LDA summary

• LDA is a powerful model for
  • Visualizing the hidden thematic structure in large corpora
  • Generalizing new data to fit into that structure
• LDA is a mixed membership model (Erosheva, 2004) that builds on the work of Deerwester et al. (1990) and Hofmann (1999).
• For document collections and other grouped data, this might be more appropriate than a simple finite mixture

• Modular: It can be embedded in more complicated models.
  • E.g., syntax and semantics; authorship; word sense
• General: The data generating distribution can be changed.
  • E.g., images; social networks; population genetics data
• Variational inference is fast; lets us to analyze large data sets.
• See Blei et al., 2003 for details and a quantitative comparison.
• Code to play with LDA is freely available on my web-site, http://www.cs.princeton.edu/ blei.

The hidden assumptions of the Dirichlet distribution

• The Dirichlet is an exponential family distribution on the simplex, positive vectors that sum to one.
• However, the near independence of components makes it a poor choice for modeling topic proportions.
• An article about fossil fuels is more likely to also be about geology than about genetics.

Summary

• Topic models provide useful descriptive statistics for analyzing and understanding the latent structure of large text collections.
• Probabilistic graphical models are a useful way to express assumptions about the hidden structure of complicated data.
• Variational methods allow us to perform posterior inference to automatically infer that structure from large data sets.
• Current research
  • Choosing the number of topics
  • Continuous time dynamic topic models
  • Topic models for prediction
  • Inferring the impact of a document

References

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	Author	volume	Date Value	title	type	journal	titleUrl	doi	note	year
2008 ModelingScience	David M. Blei			Modeling Science			http://www.cs.princeton.edu/~blei/modeling-science.pdf			2008