Gene Mention Normalization Algorithm

A Gene Mention Normalization Algorithm is an Entity Mention Normalization Algorithm that can be implemented by a Gene Mention Normalization System (to solve a Gene Mention Normalization Task).

• AKA: Gene/Proten Disambiguation Method.
  • …
• Counter-Example(s):
  • Organism Mention Normalization Algorithm.
• See: Protein NER Algorithm.

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References

2008

• (Farkas, 2008) ⇒ Richárd Farkas. (2008). “The strength of co-authorship in gene name disambiguation.” In: BMC Bioinformatics 2008, 9:69. doi:10.1186/1471-2105-9-69

2007

• (Zweigenbaum et al., 2007) ⇒ Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, and Kevin B. Cohen. (2007). “Frontiers of biomedical text mining: current progress.” In: Briefings in Bioinformatics 2007, 8(5). Oxford Univ Press. doi:10.1093/bib/bbm045

2006

• (Fang et al., 2006) ⇒ Haw-ren Fang, Kevin Murphy, Yang Jin, Jessica S. Kim, and Peter S. White. (2006). “Human Gene Name Normalization Using Text Matching with Automatically Extracted Synonym Dictionaries.” In: Proceedings of the BioNLP Workshop on Linking Natural Language Processing and Diology (BioNLP 2006).

2005

• (Chen et al., 2005) ⇒ Lifeng Chen, Hongfang Liu, and Carol Friedman. (2005). “Gene Name Ambiguity of Eukaryotic Nomenclatures.” In: Bioinformatics, 21(2).
• (Cohen, 2005) ⇒ Aaron M. Cohen. (2005). “Unsupervised gene/protein named entity normalization using automatically extracted dictionaries.” In: Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases.

2004

• (Morgan et al., 2004) ⇒ Alexander A. Morgan, Lynette Hirschman, Marc E. Colosimo, Alexander S. Yeh, and Jeff B. Colombe. (2004). “Gene Name Identification and Normalization Using a Model Organism Database.” In: Journal of Biomedical Informatics 37(6). doi:10.1016/j.jbi.2004.08.010

2002

• (Tanabe & Wilbur, 2002) ⇒ Lorraine Tanabe, and W. John Wilbur. (2002). “Tagging Gene and Protein Names in Biomedical Text.” In: Bioinformatics, 18(8)

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