Protein NER Algorithm

A Protein NER Algorithm is an NER Algorithm that can solve a Protein NER Task.

• Context:
  • It can be applied by a Protein NER System.
• See: Gene Normalization Algorithm.

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References

2005

• (Fundel et al., 2005) ⇒ Katrin Fundel, D. Güttler, R. Zimmer and J. Apostolakis. (2005). “A simple approach for protein name identification: prospects and limits. BMC Bioinformatics 2005, 6(Suppl 1):S15. (paper.pdf)
• (HanischFMZF, 2005) ⇒ D. Hanisch, Katrin Fundel, HT. Mevissen, R. Zimmer, and J. Fluck. (2005). “Prominer: rule-based protein and gene entity recognition." BMC Bioinformatics, 6 (Suppl 1), S14.
• (Leser and Hakenberg, 2005) ⇒ U. Leser and Jörg Hakenberg. (2005). “What makes a gene name? Named entity recognition in the biomedical literature. Briefings in Bioinformatics, 6(4):357-369. (paper.pdf)

2004

• (TsuruokaT, 2004) ⇒ Yoshimasa Tsuruoka, and Jun'ichi Tsujii. (2004). Improving the performance of dictionary-based approaches in protein name recognition. J Biomed Inform, 37.
• (Daraselia et al., 2004) ⇒ N. Daraselia, S. Egorov, A. Yazhuk, S. Novichkova, A. Yuryev and I. Mazo. (2004). “Extracting Protein Function Information from MEDLINE Using a Full-Sentence Parser.” In: Second European Workshop on Data Mining and Text Mining for Bioinformatics, pages 11-18. (paper.pdf)
  • Describes a Heuristic Classifier approach.
• (Fundel et al., 2004) ⇒ Katrin Fundel, D. Güttler, R. Zimmer, J. Apostolakis. (2004). “Exact versus approximate string matching for protein name identification. BioCreative 2004 Workshop. (paper.pdf)

2001

• (Stephens et al., 2001) ⇒ M. Stephens, S. Palakal, S. Mukhopadhyay, and R. Raje. (2001). “Detecting Gene Relations from MEDLINE Abstracts.” In: Pac Symp Biocomput.
  • NOTE: One of the first application of correlation to the task.

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