2005 GoPubMed
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- (Doms & Schroeder, 2005) ⇒ Andreas Doms, Michael Schroeder. (2005). “GoPubMed: exploring PubMed with the gene ontology.” In: Nucl. Acids Res., 33(suppl 2). doi:10.1093/nar/gki470
Subject Headings: Gene Ontology, Document Classification Task.
Notes
- It presents a document classification system that classifies PubMed documents into one or more nodes in Gene Ontology.
Cited by
2008
- (Morgan et al., 2008) ⇒ Alexander A. Morgan, Zhiyong Lu, Xinglong Wang, Aaron M. Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, K Bretonnel Cohen, and Lynette Hirschman. (2008). “Overview of BioCreative II gene normalization.” In: Genome Biology 2008, 9(Suppl 2):S3. doi:10.1186/gb-2008-9-s2-s3.
2007
- (Witte et al., 2007) ⇒ René Witte, Thomas Kappler, and Christopher J. O. Baker. (2007). “Ontology Design for Biomedical Text Mining.” Book Chapter in: Semantic Web". doi:10.1007/978-0-387-48438-9
Quotes
Abstract
- The biomedical literature grows at a tremendous rate and PubMed comprises already over 15 000 000 abstracts. Finding relevant literature is an important and difficult problem. We introduce GoPubMed, a web server which allows users to explore PubMed search results with the Gene Ontology (GO), a hierarchically structured vocabulary for molecular biology. GoPubMed provides the following benefits: first, it gives an overview of the literature abstracts by categorizing abstracts according to the GO and thus allowing users to quickly navigate through the abstracts by category. Second, it automatically shows general ontology terms related to the original query, which often do not even appear directly in the abstract. Third, it enables users to verify its classification because GO terms are highlighted in the abstracts and as each term is labelled with an accuracy percentage. Fourth, exploring PubMed abstracts with GoPubMed is useful as it shows definitions of GO terms without the need for further look up. GoPubMed is online at www.gopubmed.org. Querying is currently limited to 100 papers per query.
References
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| Author | volume | Date Value | title | type | journal | titleUrl | doi | note | year | |
|---|---|---|---|---|---|---|---|---|---|---|
| 2005 GoPubMed | Andreas Doms Michael Schroeder | GoPubMed: exploring PubMed with the gene ontology | Nucl | http://www.gene-quantification.net/doms-schroeder-gopubmed-2005.pdf | 10.1093/nar/gki470 | 2005 |